panel_disconnet
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@@ -7,7 +7,7 @@ Created on Tue Mar 17 13:55:42 2020
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"""
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import numpy as np
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def disconnect(image, boxes, obj_thresh = 0.5, area_min = 400, merge = 0):
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def disconnect(image, boxes, obj_thresh = 0.5, area_min = 400, merge = 0, z_thresh = 1.8):
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new_boxes = []
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for num, box in enumerate(boxes):
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@@ -17,25 +17,25 @@ def disconnect(image, boxes, obj_thresh = 0.5, area_min = 400, merge = 0):
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ymin = box.ymin + merge
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ymax = box.ymax - merge
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if xmin > 0 and ymin > 0 and xmax < image.shape[1] and ymax < image.shape[0] and box.classes[0] > obj_thresh:
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if xmin > 0 and ymin > 0 and xmax < image.shape[1] and ymax < image.shape[0] and box.get_score() > obj_thresh:
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area = (ymax - ymin)*(xmax - xmin)
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z_score = np.sum(image[np.int(ymin):np.int(ymax), np.int(xmin):np.int(xmax)]) / area
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if area > area_min:
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box.score = z_score
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box.z_score = z_score
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new_boxes.append(box)
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#boxes_area_score[str(num)] = {'xmin': xmin, 'xmax': xmax, 'ymin': ymin, 'ymax': ymax, 'score' : score, 'area' : area}
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mean_score = np.mean([box.score for box in new_boxes])
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sd_score = np.std([box.score for box in new_boxes])
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mean_score = np.mean([box.z_score for box in new_boxes])
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sd_score = np.std([box.z_score for box in new_boxes])
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new_boxes = [box for box in new_boxes if (box.score - mean_score)/sd_score > 2]
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new_boxes = [box for box in new_boxes if (box.z_score - mean_score)/sd_score > z_thresh]
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for box in new_boxes:
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z_score = (box.score - mean_score)/sd_score
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box.classes[0] = min((z_score-2)*0.5+ 0.5, 1)
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z_score = (box.z_score - mean_score)/sd_score
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box.classes[0] = min((z_score-z_thresh)*0.5/(3-z_thresh)+ 0.5, 1)
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return new_boxes
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@@ -15,7 +15,7 @@ from tqdm import tqdm
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import numpy as np
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def disconnect(image, boxes, obj_thresh = 0.5, area_min = 400, merge = 0):
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def disconnect(image, boxes, obj_thresh = 0.5, area_min = 400, merge = 0, z_thresh = 1.8):
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new_boxes = []
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for num, box in enumerate(boxes):
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@@ -25,31 +25,31 @@ def disconnect(image, boxes, obj_thresh = 0.5, area_min = 400, merge = 0):
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ymin = box.ymin + merge
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ymax = box.ymax - merge
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if xmin > 0 and ymin > 0 and xmax < image.shape[1] and ymax < image.shape[0] and box.classes[0] > obj_thresh:
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if xmin > 0 and ymin > 0 and xmax < image.shape[1] and ymax < image.shape[0] and box.get_score() > obj_thresh:
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area = (ymax - ymin)*(xmax - xmin)
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z_score = np.sum(image[np.int(ymin):np.int(ymax), np.int(xmin):np.int(xmax)]) / area
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if area > area_min:
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box.score = z_score
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box.z_score = z_score
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new_boxes.append(box)
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#boxes_area_score[str(num)] = {'xmin': xmin, 'xmax': xmax, 'ymin': ymin, 'ymax': ymax, 'score' : score, 'area' : area}
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mean_score = np.mean([box.score for box in new_boxes])
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sd_score = np.std([box.score for box in new_boxes])
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mean_score = np.mean([box.z_score for box in new_boxes])
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sd_score = np.std([box.z_score for box in new_boxes])
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new_boxes = [box for box in new_boxes if (box.score - mean_score)/sd_score > 2]
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new_boxes = [box for box in new_boxes if (box.z_score - mean_score)/sd_score > z_thresh]
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for box in new_boxes:
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z_score = (box.score - mean_score)/sd_score
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box.classes[0] = min((z_score-2)*0.5+ 0.5, 1)
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z_score = (box.z_score - mean_score)/sd_score
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box.classes[0] = min((z_score-z_thresh)*0.5/(3-z_thresh)+ 0.5, 1)
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return new_boxes
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def disconnect_plot(image, boxes, obj_thresh = 0.5, area_min = 400, merge = 0):
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def disconnect_plot(image, boxes, obj_thresh = 0.5, area_min = 400, merge = 0, z_thresh = 1.8):
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new_boxes = []
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for num, box in enumerate(boxes):
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@@ -59,21 +59,21 @@ def disconnect_plot(image, boxes, obj_thresh = 0.5, area_min = 400, merge = 0):
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ymin = box.ymin + merge
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ymax = box.ymax - merge
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if xmin > 0 and ymin > 0 and xmax < image.shape[1] and ymax < image.shape[0] and box.classes[0] > obj_thresh:
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if xmin > 0 and ymin > 0 and xmax < image.shape[1] and ymax < image.shape[0] and box.get_score() > obj_thresh:
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area = (ymax - ymin)*(xmax - xmin)
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z_score = np.sum(image[np.int(ymin):np.int(ymax), np.int(xmin):np.int(xmax)]) / area
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if area > area_min:
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box.score = z_score
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box.z_score = z_score
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new_boxes.append(box)
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#boxes_area_score[str(num)] = {'xmin': xmin, 'xmax': xmax, 'ymin': ymin, 'ymax': ymax, 'score' : score, 'area' : area}
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mean_score = np.mean([box.score for box in new_boxes])
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sd_score = np.std([box.score for box in new_boxes])
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mean_score = np.mean([box.z_score for box in new_boxes])
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sd_score = np.std([box.z_score for box in new_boxes])
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normal_score = ([box.score for box in new_boxes] - mean_score)/sd_score
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normal_score = ([box.z_score for box in new_boxes] - mean_score)/sd_score
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# plt.figure()
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# _ = plt.hist(normal_score, bins='auto') # arguments are passed to np.histogram
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# plt.title("Histogram with 'auto' bins")
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@@ -87,12 +87,12 @@ def disconnect_plot(image, boxes, obj_thresh = 0.5, area_min = 400, merge = 0):
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# plt.title("Histogram with 'auto' bins")
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# plt.show()
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new_boxes = [box for box in new_boxes if (box.score - mean_score)/sd_score > 2]
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new_boxes = [box for box in new_boxes if (box.z_score - mean_score)/sd_score > z_thresh]
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for box in new_boxes:
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z_score = (box.score - mean_score)/sd_score
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box.classes[0] = min((z_score-2)*0.5+ 0.5, 1)
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z_score = (box.z_score - mean_score)/sd_score
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box.classes[0] = min((z_score-z_thresh)*0.5/(3-z_thresh)+ 0.5, 1)
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@@ -224,20 +224,27 @@ def _main_(args):
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# the main loop
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times = []
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for image_path in image_paths:
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images = [cv2.imread(image_path) for image_path in image_paths]
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print(images)
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start = time.time()
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# predict the bounding boxes
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boxes = get_yolo_boxes(infer_model, images, net_h, net_w, config['model']['anchors'], obj_thresh, nms_thresh)
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boxes = [[box for box in boxes_image if box.get_score() > obj_thresh] for boxes_image in boxes]
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print('Elapsed time = {}'.format(time.time() - start))
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times.append(time.time() - start)
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boxes_disc = [disconnect(image, boxes_image, z_thresh = 1.8) for image, boxes_image in zip(images, boxes)]
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for image, boxes_image in zip(images, boxes_disc):
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image = cv2.imread(image_path)
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print(image_path)
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start = time.time()
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# predict the bounding boxes
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boxes = get_yolo_boxes(infer_model, [image], net_h, net_w, config['model']['anchors'], obj_thresh, nms_thresh)[0]
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print('Elapsed time = {}'.format(time.time() - start))
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times.append(time.time() - start)
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# draw bounding boxes on the image using labels
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I = image.copy()
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draw_boxes(I, boxes, config['model']['labels'], obj_thresh)
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draw_boxes(I, boxes_image, config['model']['labels'], obj_thresh)
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plt.figure(figsize = (10,12))
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plt.imshow(I)
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# write the image with bounding boxes to file
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cv2.imwrite(output_path + image_path.split('/')[-1], np.uint8(image))
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